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ndst1b N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b [ Callorhinchus milii (elephant shark) ]

Gene ID: 103188239, updated on 7-Dec-2023

Summary

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Gene symbol
ndst1b
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b
See related
Ensembl:ENSCMIG00000007139
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
ndst1
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Genomic context

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See ndst1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704754.1 (18934401..18967414)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890257.1 (664113..718078, complement)

NW_024704754.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene small nucleolar RNA SNORA63 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene ribosomal protein S14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Names
N-deacetylase and N-sulfotransferase 1
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704754.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    18934401..18967414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007908159.2 → XP_007906350.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    See identical proteins and their annotated locations for XP_007906350.1

    UniProtKB/TrEMBL
    A0A4W3HEZ3, A0A4W3HGJ7
    Conserved Domains (2) summary
    pfam00685
    Location:600 → 851
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 511
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_007908157.2 → XP_007906348.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    See identical proteins and their annotated locations for XP_007906348.1

    UniProtKB/TrEMBL
    A0A4W3HEZ3, A0A4W3HGJ7
    Related
    ENSCMIP00000014460.1
    Conserved Domains (2) summary
    pfam00685
    Location:600 → 851
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 511
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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