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taf1a TATA box binding protein (TBP)-associated factor, RNA polymerase I, A [ Callorhinchus milii (elephant shark) ]

Gene ID: 103186141, updated on 11-Mar-2024

Summary

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Gene symbol
taf1a
Gene description
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A
See related
Ensembl:ENSCMIG00000011416
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See taf1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704744.1 (97381031..97398708)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890187.1 (284713..302433)

NW_024704744.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene follicle stimulating hormone receptor Neighboring gene HHIP-like 2 Neighboring gene dual specificity phosphatase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-associated factor RNA polymerase I subunit A
Names
TATA box-binding protein-associated factor RNA polymerase I subunit A-like protein
TATA-box binding protein associated factor, RNA polymerase I subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704744.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    97381031..97398708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007904999.2 → XP_007903190.1  TATA box-binding protein-associated factor RNA polymerase I subunit A

    See identical proteins and their annotated locations for XP_007903190.1

    UniProtKB/TrEMBL
    A0A4W3I7I9, V9KHM8
    Related
    ENSCMIP00000026004.1
    Conserved Domains (1) summary
    pfam14929
    Location:52 → 444
    TAF1_subA; TAF RNA Polymerase I subunit A

  2. XM_007905000.2 → XP_007903191.1  TATA box-binding protein-associated factor RNA polymerase I subunit A

    See identical proteins and their annotated locations for XP_007903191.1

    UniProtKB/TrEMBL
    A0A4W3I7I9, V9KHM8
    Conserved Domains (1) summary
    pfam14929
    Location:52 → 444
    TAF1_subA; TAF RNA Polymerase I subunit A

  3. XM_007905003.2 → XP_007903194.1  TATA box-binding protein-associated factor RNA polymerase I subunit A

    See identical proteins and their annotated locations for XP_007903194.1

    UniProtKB/TrEMBL
    A0A4W3I7I9, V9KHM8
    Conserved Domains (1) summary
    pfam14929
    Location:52 → 444
    TAF1_subA; TAF RNA Polymerase I subunit A
Nucleotide Protein
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