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chst15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103185442, updated on 11-Mar-2024

Summary

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Gene symbol
chst15
Gene description
carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
See related
Ensembl:ENSCMIG00000007713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See chst15 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704748.1 (24321027..24360607)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890168.1 (1411720..1434900, complement)

NW_024704748.1Genomic Context describing neighboring genes Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase Neighboring gene NK1 transcription factor related 2-like,a Neighboring gene ornithine aminotransferase Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene carboxypeptidase X (M14 family), member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hexose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 15
Names
carbohydrate sulfotransferase 15-like protein
NP_001279155.1
XP_042192529.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292226.1 → NP_001279155.1  carbohydrate sulfotransferase 15

    See identical proteins and their annotated locations for NP_001279155.1

    Status: PROVISIONAL

    Source sequence(s)
    JX053200
    UniProtKB/TrEMBL
    K4FTF3
    Conserved Domains (1) summary
    cl21551
    Location:245 → 490
    Sulfotransfer_1; Sulfotransferase domain

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704748.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    24321027..24360607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042336595.1 → XP_042192529.1  carbohydrate sulfotransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A4W3I4A8
    Conserved Domains (1) summary
    pfam13469
    Location:243 → 484
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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