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stambpl1 STAM binding protein-like 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103180780, updated on 11-Mar-2024

Summary

Gene symbol
stambpl1
Gene description
STAM binding protein-like 1
See related
Ensembl:ENSCMIG00000019048
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See stambpl1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704748.1 (19270694..19283715)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890056.1 (4374797..4389326, complement)

NW_024704748.1Genomic Context describing neighboring genes Neighboring gene renalase, FAD-dependent amine oxidase Neighboring gene lipase, gastric Neighboring gene ankyrin repeat domain 22 Neighboring gene U2 spliceosomal RNA Neighboring gene actin alpha 2, smooth muscle Neighboring gene tumor necrosis factor receptor superfamily member 6

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables metal-dependent deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
AMSH-like protease
Names
AMSH-like protease-like protein
NP_001279902.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292973.1NP_001279902.1  AMSH-like protease

    See identical proteins and their annotated locations for NP_001279902.1

    Status: PROVISIONAL

    Source sequence(s)
    JX053370
    UniProtKB/TrEMBL
    K4FTS2, V9KSS3
    Conserved Domains (2) summary
    cd08066
    Location:271425
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:45147
    USP8_dimer; USP8 dimerization domain

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704748.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    19270694..19283715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)