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zbtb44 zinc finger and BTB domain containing 44 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103180314, updated on 11-Mar-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
See related
Ensembl:ENSCMIG00000006671
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704766.1 (3514615..3531169, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890097.1 (3560723..3577188, complement)

NW_024704766.1Genomic Context describing neighboring genes Neighboring gene neural cell adhesion molecule 1 Neighboring gene transfer RNA alanine (anticodon GGC) Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15 Neighboring gene uncharacterized LOC103180315

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704766.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    3514615..3531169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007896102.2 → XP_007894293.1  zinc finger and BTB domain-containing protein 44

    UniProtKB/TrEMBL
    A0A4W3H8S9
    Related
    ENSCMIP00000013268.1
    Conserved Domains (8) summary
    smart00225
    Location:32 → 127
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:380 → 446
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:486 → 508
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:396 → 418
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:21 → 124
    BTB; BTB/POZ domain
    pfam13465
    Location:410 → 435
    zf-H2C2_2; Zinc-finger double domain
    cl02475
    Location:426 → 489
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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