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npl N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) [ Callorhinchus milii (elephant shark) ]

Gene ID: 103179995, updated on 11-Mar-2024

Summary

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Gene symbol
npl
Gene description
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See npl in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (9432431..9448754, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890094.1 (2437535..2454152, complement)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-galactosyltransferase 5-like Neighboring gene beta-1,3-galactosyltransferase 5-like Neighboring gene translocated promoter region b, nuclear basket protein Neighboring gene proteoglycan 4b Neighboring gene uncharacterized LOC103179996

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    9432431..9448754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042335280.1 → XP_042191214.1  N-acetylneuraminate lyase isoform X2

    UniProtKB/TrEMBL
    V9LAJ3
    Conserved Domains (1) summary
    cl21457
    Location:10 → 273
    TIM; TIM-like beta/alpha barrel domains

  2. XM_007895576.2 → XP_007893767.2  N-acetylneuraminate lyase isoform X1

    UniProtKB/TrEMBL
    V9LAJ3
    Conserved Domains (1) summary
    cl21457
    Location:19 → 282
    TIM; TIM-like beta/alpha barrel domains

  3. XM_007895579.2 → XP_007893770.1  N-acetylneuraminate lyase isoform X2

    See identical proteins and their annotated locations for XP_007893770.1

    UniProtKB/TrEMBL
    V9LAJ3
    Conserved Domains (1) summary
    cl21457
    Location:10 → 273
    TIM; TIM-like beta/alpha barrel domains

  4. XM_007895578.2 → XP_007893769.1  N-acetylneuraminate lyase isoform X2

    See identical proteins and their annotated locations for XP_007893769.1

    UniProtKB/TrEMBL
    V9LAJ3
    Conserved Domains (1) summary
    cl21457
    Location:10 → 273
    TIM; TIM-like beta/alpha barrel domains

  5. XM_007895581.2 → XP_007893772.1  N-acetylneuraminate lyase isoform X2

    See identical proteins and their annotated locations for XP_007893772.1

    UniProtKB/TrEMBL
    V9LAJ3
    Conserved Domains (1) summary
    cl21457
    Location:10 → 273
    TIM; TIM-like beta/alpha barrel domains
Nucleotide Protein
Heading Accession and Version

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