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LOC103178698 parvalbumin beta 3 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103178698, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103178698
Gene description
parvalbumin beta 3
See related
Ensembl:ENSCMIG00000006255
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
ocm2
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Genomic context

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See LOC103178698 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704757.1 (8899983..8904221)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890083.1 (1307764..1312006)

NW_024704757.1Genomic Context describing neighboring genes Neighboring gene tectonin beta-propeller repeat containing 1a Neighboring gene lemur tyrosine kinase 2 Neighboring gene parvalbumin, thymic-like Neighboring gene parvalbumin, thymic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
parvalbumin beta 3
Names
Parvalbumin, thymic
oncomodulin 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704757.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    8899983..8904221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007893564.2 → XP_007891755.1  parvalbumin beta 3

    See identical proteins and their annotated locations for XP_007891755.1

    UniProtKB/TrEMBL
    A0A4W3HAP0, V9LD03
    Related
    ENSCMIP00000012223.1
    Conserved Domains (2) summary
    cd00051
    Location:43 → 108
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:44 → 103
    EF-hand_7; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

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