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hs3st1 heparan sulfate-glucosamine 3-sulfotransferase 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103175792, updated on 7-Dec-2023

Summary

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Gene symbol
hs3st1
Gene description
heparan sulfate-glucosamine 3-sulfotransferase 1
See related
Ensembl:ENSCMIG00000008817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
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Genomic context

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See hs3st1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (39442708..39448516, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890064.1 (1571859..1577556, complement)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121848147 Neighboring gene uncharacterized LOC103175790 Neighboring gene RAB28, member RAS oncogene family Neighboring gene NK3 homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1
Names
heparan sulfate 3-O-sulfotransferase-1
NP_001279429.1
XP_007887177.1
XP_007887178.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292500.1 → NP_001279429.1  heparan sulfate glucosamine 3-O-sulfotransferase 1 precursor

    See identical proteins and their annotated locations for NP_001279429.1

    Status: PROVISIONAL

    Source sequence(s)
    JX053007
    UniProtKB/TrEMBL
    K4FTU4
    Conserved Domains (1) summary
    pfam00685
    Location:62 → 299
    Sulfotransfer_1; Sulfotransferase domain

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    39442708..39448516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007888986.2 → XP_007887177.1  heparan sulfate glucosamine 3-O-sulfotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_007887177.1

    UniProtKB/TrEMBL
    K4FTU4
    Conserved Domains (1) summary
    pfam00685
    Location:62 → 299
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_007888987.2 → XP_007887178.1  heparan sulfate glucosamine 3-O-sulfotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_007887178.1

    UniProtKB/TrEMBL
    K4FTU4
    Conserved Domains (1) summary
    pfam00685
    Location:62 → 299
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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