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zfr zinc finger RNA binding protein [ Poecilia formosa (Amazon molly) ]

Gene ID: 103155678, updated on 11-Mar-2024

Summary

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Gene symbol
zfr
Gene description
zinc finger RNA binding protein
See related
Ensembl:ENSPFOG00000005931
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See zfr in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800380.1 (396800..494574, complement)

NW_006800380.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 151 member B Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene uncharacterized LOC103155683 Neighboring gene ubiquinol-cytochrome-c reductase complex assembly factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800380.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800380.1 Reference Poecilia_formosa-5.1.2

    Range
    396800..494574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007577440.2 → XP_007577502.1  zinc finger RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A087XKG2, A0A096LY47
    Related
    ENSPFOP00000006265.2, ENSPFOT00000006275.2
    Conserved Domains (3) summary
    smart00572
    Location:779 → 1033
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:576 → 607
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:323 → 345
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_007577442.2 → XP_007577504.1  zinc finger RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A096LY47
    Conserved Domains (3) summary
    smart00451
    Location:576 → 607
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:323 → 345
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:779 → 876
    DZF; DZF domain
Nucleotide Protein
Heading Accession and Version

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