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LOC103152532 gastrula zinc finger protein XlCGF57.1-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 103152532, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103152532
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
Ensembl:ENSPFOG00000024156
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103152532 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799946.1 (5289691..5295006)

NW_006799946.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene oocyte zinc finger protein XlCOF20-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799946.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799946.1 Reference Poecilia_formosa-5.1.2

    Range
    5289691..5295006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016661344.1 → XP_016516830.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

    UniProtKB/TrEMBL
    A0A096MCE7
    Related
    ENSPFOP00000029088.1, ENSPFOT00000026737.1
    Conserved Domains (3) summary
    COG5048
    Location:211 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:312 → 332
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:324 → 348
    zf-H2C2_2; Zinc-finger double domain

  2. XM_016661348.1 → XP_016516834.1  gastrula zinc finger protein XlCGF57.1-like isoform X3

    UniProtKB/TrEMBL
    A0A096LSW1
    Related
    ENSPFOP00000022252.1, ENSPFOT00000024409.1
    Conserved Domains (3) summary
    COG5048
    Location:189 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:302 → 326
    zf-H2C2_2; Zinc-finger double domain

  3. XM_016661346.1 → XP_016516832.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

    UniProtKB/TrEMBL
    A0A096MCE7
    Conserved Domains (3) summary
    COG5048
    Location:211 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:312 → 332
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:324 → 348
    zf-H2C2_2; Zinc-finger double domain

  4. XM_016661340.1 → XP_016516826.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:214 → 458
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:315 → 335
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:327 → 351
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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