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ncbp1 nuclear cap binding protein subunit 1 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103152184, updated on 12-Sep-2024

Summary

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Gene symbol
ncbp1
Gene description
nuclear cap binding protein subunit 1
See related
Ensembl:ENSPFOG00000004158
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See ncbp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800242.1 (544615..554393)

NW_006800242.1Genomic Context describing neighboring genes Neighboring gene SEC24 homolog B, COPII coat complex component Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene solute carrier family 49 member 3 Neighboring gene polycomb group ring finger 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800242.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1
Names
nuclear cap binding protein subunit 1, 80kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800242.1 Reference Poecilia_formosa-5.1.2

    Range
    544615..554393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007572552.2 → XP_007572614.1  nuclear cap-binding protein subunit 1

    UniProtKB/TrEMBL
    A0A087XF49
    Related
    ENSPFOP00000004402.1, ENSPFOT00000004410.1
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:494 → 760
    MIF4G_like_2; MIF4G like
Nucleotide Protein
Heading Accession and Version

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