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sgca sarcoglycan, alpha [ Poecilia formosa (Amazon molly) ]

Gene ID: 103151426, updated on 11-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSPFOG00000015143
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799946.1 (2898272..2904507)

NW_006799946.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene putative all-trans-retinol 13,14-reductase Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799946.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799946.1 Reference Poecilia_formosa-5.1.2

    Range
    2898272..2904507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016681491.1 → XP_016536977.1  alpha-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A087YAY9
    Related
    ENSPFOP00000015192.2, ENSPFOT00000015214.2

  2. XM_007571471.2 → XP_007571533.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A087YAY9
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 377
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_007571480.2 → XP_007571542.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A087YAY9
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 376
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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