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zfhx3b zinc finger homeobox 3b [ Poecilia formosa (Amazon molly) ]

Gene ID: 103150721, updated on 11-Mar-2024

Summary

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Gene symbol
zfhx3b
Gene description
zinc finger homeobox 3b
See related
Ensembl:ENSPFOG00000001702
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
zfhx3
Orthologs
human zebrafish all
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Genomic context

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See zfhx3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800200.1 (250267..561864, complement)

NW_006800200.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103150720 Neighboring gene uncharacterized LOC107838465 Neighboring gene uncharacterized LOC107838466 Neighboring gene uncharacterized LOC107838464 Neighboring gene hepatic nuclear factor 4, beta Neighboring gene cysteine-rich secretory protein LCCL domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800200.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger homeobox protein 3
Names
zinc finger homeobox 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800200.1 Reference Poecilia_formosa-5.1.2

    Range
    250267..561864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016680891.1 → XP_016536377.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A087X7C4
    Conserved Domains (6) summary
    PHA00732
    Location:1344 → 1396
    PHA00732; hypothetical protein
    smart00389
    Location:2403 → 2459
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1677 → 1701
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1532 → 1552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2851
    Homeobox; Homeobox domain

  2. XM_016680890.1 → XP_016536376.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A087X7C4
    Conserved Domains (6) summary
    PHA00732
    Location:1344 → 1396
    PHA00732; hypothetical protein
    smart00389
    Location:2403 → 2459
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1677 → 1701
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1532 → 1552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2851
    Homeobox; Homeobox domain

  3. XM_007570444.2 → XP_007570506.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A087X7C4
    Related
    ENSPFOP00000001677.2, ENSPFOT00000001680.2
    Conserved Domains (6) summary
    PHA00732
    Location:1344 → 1396
    PHA00732; hypothetical protein
    smart00389
    Location:2403 → 2459
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1677 → 1701
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1532 → 1552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2851
    Homeobox; Homeobox domain

  4. XM_007570445.2 → XP_007570507.1  zinc finger homeobox protein 3 isoform X2

    Conserved Domains (6) summary
    PHA00732
    Location:123 → 175
    PHA00732; hypothetical protein
    smart00389
    Location:1085 → 1141
    HOX; Homeodomain
    COG5576
    Location:1520 → 1671
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:456 → 480
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:1578 → 1630
    Homeobox; Homeobox domain
Nucleotide Protein
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