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khsrp KH-type splicing regulatory protein [ Poecilia formosa (Amazon molly) ]

Gene ID: 103150540, updated on 12-Sep-2024

Summary

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Gene symbol
khsrp
Gene description
KH-type splicing regulatory protein
See related
Ensembl:ENSPFOG00000004577
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See khsrp in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800195.1 (489917..499033)

NW_006800195.1Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signaling 5-like Neighboring gene chromosome unknown C19orf53 homolog Neighboring gene solute carrier family 25 member 23a Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene regulatory factor X, 1b (influences HLA class II expression)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800195.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800195.1 Reference Poecilia_formosa-5.1.2

    Range
    489917..499033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016680770.1 → XP_016536256.1  far upstream element-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A096MF08
    Conserved Domains (3) summary
    smart00322
    Location:177 → 244
    KH; K homology RNA-binding domain
    cd00105
    Location:96 → 159
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:555 → 573
    DUF1897; Domain of unknown function (DUF1897)

  2. XM_007570212.2 → XP_007570274.1  far upstream element-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A087XGT7, A0A096MF08
    Related
    ENSPFOP00000004990.2, ENSPFOT00000004999.2
    Conserved Domains (3) summary
    smart00322
    Location:183 → 250
    KH; K homology RNA-binding domain
    cd00105
    Location:102 → 165
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:561 → 579
    DUF1897; Domain of unknown function (DUF1897)
Nucleotide Protein
Heading Accession and Version

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