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edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) [ Poecilia formosa (Amazon molly) ]

Gene ID: 103150248, updated on 11-Mar-2024

Summary

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Gene symbol
edc3
Gene description
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
See related
Ensembl:ENSPFOG00000012204
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See edc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800185.1 (69416..74956)

NW_006800185.1Genomic Context describing neighboring genes Neighboring gene putative leucine-rich repeat-containing protein DDB_G0290503 Neighboring gene synaptotagmin XVIIIb Neighboring gene tyrosine-protein kinase CSK-like Neighboring gene N6-Methyl-AMP deaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800185.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800185.1 Reference Poecilia_formosa-5.1.2

    Range
    69416..74956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007569785.2 → XP_007569847.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A087Y2F8
    Related
    ENSPFOP00000012211.1, ENSPFOT00000012228.1
    Conserved Domains (4) summary
    cd01737
    Location:2 → 65
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:272 → 427
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:170 → 270
    FDF; FDF domain
    pfam16598
    Location:77 → 166
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3

  2. XM_016680579.1 → XP_016536065.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A087Y2F8
    Conserved Domains (4) summary
    cd01737
    Location:2 → 65
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:272 → 427
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:170 → 270
    FDF; FDF domain
    pfam16598
    Location:77 → 166
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein
Heading Accession and Version

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