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fubp1 far upstream element (FUSE) binding protein 1 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103148577, updated on 11-Mar-2024

Summary

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Gene symbol
fubp1
Gene description
far upstream element (FUSE) binding protein 1
See related
Ensembl:ENSPFOG00000000238
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See fubp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800147.1 (254116..266945)

NW_006800147.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene solute carrier family 25 member 24, like Neighboring gene mitoguardin 1 Neighboring gene ubiquitin specific peptidase 33 Neighboring gene zinc finger, ZZ-type containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800147.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1
Names
far upstream element binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800147.1 Reference Poecilia_formosa-5.1.2

    Range
    254116..266945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007567406.2 → XP_007567468.1  far upstream element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A087X3G6
    Conserved Domains (2) summary
    smart00322
    Location:377 → 443
    KH; K homology RNA-binding domain
    cd00105
    Location:100 → 162
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  2. XM_007567407.2 → XP_007567469.1  far upstream element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A087X3G6
    Related
    ENSPFOP00000000319.2, ENSPFOT00000000320.2
    Conserved Domains (2) summary
    smart00322
    Location:377 → 443
    KH; K homology RNA-binding domain
    cd00105
    Location:100 → 162
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  3. XM_007567409.2 → XP_007567471.1  far upstream element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A087X3G6
    Conserved Domains (2) summary
    smart00322
    Location:377 → 443
    KH; K homology RNA-binding domain
    cd00105
    Location:100 → 162
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  4. XM_007567408.2 → XP_007567470.1  far upstream element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A087X3G6
    Conserved Domains (2) summary
    smart00322
    Location:366 → 432
    KH; K homology RNA-binding domain
    cd00105
    Location:89 → 151
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  5. XM_007567410.2 → XP_007567472.1  far upstream element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A087X3G6
    Conserved Domains (2) summary
    smart00322
    Location:366 → 432
    KH; K homology RNA-binding domain
    cd00105
    Location:89 → 151
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

RNA

  1. XR_001664130.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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