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scaper S-phase cyclin A-associated protein in the ER [ Poecilia formosa (Amazon molly) ]

Gene ID: 103147830, updated on 11-Mar-2024

Summary

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Gene symbol
scaper
Gene description
S-phase cyclin A-associated protein in the ER
See related
Ensembl:ENSPFOG00000003057
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See scaper in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800130.1 (61398..127831, complement)

NW_006800130.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 266 Neighboring gene electron transfer flavoprotein subunit alpha Neighboring gene ISL LIM homeobox 2 Neighboring gene proline-serine-threonine phosphatase interacting protein 1a Neighboring gene reticulocalbin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800130.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S phase cyclin A-associated protein in the endoplasmic reticulum

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800130.1 Reference Poecilia_formosa-5.1.2

    Range
    61398..127831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007566364.2 → XP_007566426.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X2

    Conserved Domains (7) summary
    pfam00836
    Location:624 → 721
    Stathmin; Stathmin family
    pfam12874
    Location:889 → 911
    zf-met; Zinc-finger of C2H2 type
    pfam15346
    Location:650 → 806
    ARGLU; Arginine and glutamate-rich 1
    pfam16501
    Location:145 → 238
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
    cd16269
    Location:855 → 865
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:761 → 869
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl21478
    Location:728 → 803
    ATP-synt_B; ATP synthase B/B' CF(0)

  2. XM_016678813.1 → XP_016534299.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X3

    UniProtKB/TrEMBL
    A0A087XBL4
    Related
    ENSPFOP00000003167.2, ENSPFOT00000003171.2

  3. XM_007566363.2 → XP_007566425.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1

    Conserved Domains (7) summary
    pfam00836
    Location:625 → 722
    Stathmin; Stathmin family
    pfam12874
    Location:890 → 912
    zf-met; Zinc-finger of C2H2 type
    pfam15346
    Location:651 → 807
    ARGLU; Arginine and glutamate-rich 1
    pfam16501
    Location:145 → 238
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
    cd16269
    Location:856 → 866
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:762 → 870
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl21478
    Location:729 → 804
    ATP-synt_B; ATP synthase B/B' CF(0)

  4. XM_007566366.2 → XP_007566428.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X7

    Conserved Domains (4) summary
    pfam00836
    Location:507 → 603
    Stathmin; Stathmin family
    pfam12874
    Location:771 → 793
    zf-met; Zinc-finger of C2H2 type
    pfam16501
    Location:145 → 238
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
    cl21478
    Location:610 → 685
    ATP-synt_B; ATP synthase B/B' CF(0)

  5. XM_007566365.2 → XP_007566427.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X6

    Conserved Domains (4) summary
    pfam00836
    Location:508 → 604
    Stathmin; Stathmin family
    pfam12874
    Location:772 → 794
    zf-met; Zinc-finger of C2H2 type
    pfam16501
    Location:145 → 238
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
    cl21478
    Location:611 → 686
    ATP-synt_B; ATP synthase B/B' CF(0)

  6. XM_016678815.1 → XP_016534301.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X5

  7. XM_016678814.1 → XP_016534300.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X4

Nucleotide Protein
Heading Accession and Version

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