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LOC103146838 transcriptional repressor scratch 1-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 103146838, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103146838
Gene description
transcriptional repressor scratch 1-like
See related
Ensembl:ENSPFOG00000005616
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103146838 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800108.1 (856843..867186, complement)

NW_006800108.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107837714 Neighboring gene uncharacterized LOC107837720 Neighboring gene uncharacterized LOC107837713 Neighboring gene solute carrier family 39 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800108.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor scratch 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800108.1 Reference Poecilia_formosa-5.1.2

    Range
    856843..867186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007564893.2 → XP_007564955.1  transcriptional repressor scratch 1-like

    UniProtKB/TrEMBL
    A0A087XI97, A0A096LRR7
    Related
    ENSPFOP00000005500.2, ENSPFOT00000005509.2
    Conserved Domains (4) summary
    sd00017
    Location:207 → 227
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:181 → 198
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:235 → 255
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:220 → 243
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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