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tut1 terminal uridylyl transferase 1, U6 snRNA-specific [ Poecilia formosa (Amazon molly) ]

Gene ID: 103143178, updated on 11-Apr-2024

Summary

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Gene symbol
tut1
Gene description
terminal uridylyl transferase 1, U6 snRNA-specific
See related
Ensembl:ENSPFOG00000016195
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See tut1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799943.1 (2107287..2116623, complement)

NW_006799943.1Genomic Context describing neighboring genes Neighboring gene MAGUK p55 scaffold protein 2b Neighboring gene peptide Y-like Neighboring gene marker of proliferation Ki-67 Neighboring gene uncharacterized LOC107837071

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799943.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
speckle targeted PIP5K1A-regulated poly(A) polymerase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799943.1 Reference Poecilia_formosa-5.1.2

    Range
    2107287..2116623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007559620.2 → XP_007559682.1  speckle targeted PIP5K1A-regulated poly(A) polymerase-like

    UniProtKB/TrEMBL
    A0A087YDZ4
    Related
    ENSPFOP00000016247.2, ENSPFOT00000016269.2
    Conserved Domains (7) summary
    cd05402
    Location:179 → 328
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    smart00451
    Location:11 → 39
    ZnF_U1; U1-like zinc finger
    COG0724
    Location:27 → 153
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5260
    Location:124 → 513
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
    cd12279
    Location:52 → 125
    RRM_TUT1; RNA recognition motif in speckle targeted PIP5K1A-regulated poly(A) polymerase (Star-PAP) and similar proteins
    sd00020
    Location:16 → 38
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03828
    Location:422 → 490
    PAP_assoc; Cid1 family poly A polymerase
Nucleotide Protein
Heading Accession and Version

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