U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zbtb20 zinc finger and BTB domain containing 20 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103141691, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
zbtb20
Gene description
zinc finger and BTB domain containing 20
See related
Ensembl:ENSPFOG00000019375
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zbtb20 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799942.1 (6409797..6439813, complement)

NW_006799942.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha 3 Neighboring gene uncharacterized LOC103141681 Neighboring gene discs large MAGUK scaffold protein 4 Neighboring gene eph receptor B4a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006799942.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and BTB domain-containing protein 20

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799942.1 Reference Poecilia_formosa-5.1.2

    Range
    6409797..6439813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016674354.1 → XP_016529840.1  zinc finger and BTB domain-containing protein 20 isoform X2

    Conserved Domains (5) summary
    smart00225
    Location:32 → 123
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:479 → 499
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533 → 555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:21 → 119
    BTB; BTB/POZ domain
    pfam13465
    Location:547 → 572
    zf-H2C2_2; Zinc-finger double domain

  2. XM_007557429.2 → XP_007557491.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A087YN90
    Related
    ENSPFOP00000019493.2, ENSPFOT00000019515.2
    Conserved Domains (6) summary
    smart00225
    Location:46 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:489 → 599
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:493 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:547 → 569
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:35 → 133
    BTB; BTB/POZ domain
    pfam13465
    Location:561 → 586
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.