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zfr2 zinc finger RNA binding protein 2 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103138499, updated on 11-Mar-2024

Summary

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Gene symbol
zfr2
Gene description
zinc finger RNA binding protein 2
See related
Ensembl:ENSPFOG00000010053
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See zfr2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799991.1 (1430174..1453894, complement)

NW_006799991.1Genomic Context describing neighboring genes Neighboring gene retinal homeobox gene 1 Neighboring gene megakaryocyte-associated tyrosine kinase Neighboring gene ATCAY kinesin light chain interacting caytaxin a Neighboring gene muscle-specific beta 1 integrin binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799991.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799991.1 Reference Poecilia_formosa-5.1.2

    Range
    1430174..1453894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007552706.2 → XP_007552768.1  zinc finger RNA-binding protein isoform X4

    Conserved Domains (4) summary
    smart00572
    Location:729 → 990
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:529 → 560
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:307 → 329
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16058
    Location:83 → 201
    Mucin-like; Mucin-like

  2. XM_007552704.2 → XP_007552766.1  zinc finger RNA-binding protein isoform X2

    Conserved Domains (3) summary
    smart00572
    Location:734 → 995
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:534 → 565
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:312 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_007552705.2 → XP_007552767.1  zinc finger RNA-binding protein isoform X3

    Conserved Domains (3) summary
    smart00572
    Location:730 → 991
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:530 → 561
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:308 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_007552703.2 → XP_007552765.1  zinc finger RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A087XXA5
    Related
    ENSPFOP00000010408.2, ENSPFOT00000010423.2
    Conserved Domains (3) summary
    smart00572
    Location:735 → 996
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:535 → 566
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:313 → 335
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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