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LOC103135909 zinc finger protein OZF-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 103135909, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103135909
Gene description
zinc finger protein OZF-like
See related
Ensembl:ENSPFOG00000015002
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103135909 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799967.1 (2795201..2801409, complement)

NW_006799967.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase-like family, member 11 Neighboring gene basal body-orientation factor 1-like Neighboring gene protein CutA homolog Neighboring gene uncharacterized LOC107835868 Neighboring gene uncharacterized LOC107835869

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799967.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein OZF-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799967.1 Reference Poecilia_formosa-5.1.2

    Range
    2795201..2801409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007548920.2 → XP_007548982.1  zinc finger protein OZF-like

    UniProtKB/TrEMBL
    A0A087YAH7
    Related
    ENSPFOP00000015030.1, ENSPFOT00000015052.1
    Conserved Domains (5) summary
    COG5048
    Location:204 → 537
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:433 → 453
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:183 → 203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:347 → 369
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:305 → 330
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_001661714.1 RNA Sequence

Nucleotide Protein
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