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pcbp2 poly(rC) binding protein 2 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103135903, updated on 28-Dec-2023

Summary

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Gene symbol
pcbp2
Gene description
poly(rC) binding protein 2
See related
Ensembl:ENSPFOG00000008011
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See pcbp2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799941.1 (1610633..1623535)

NW_006799941.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 13-like Neighboring gene proline-rich protein 13-like Neighboring gene mitogen-activated protein kinase kinase kinase 12 Neighboring gene myg1 exonuclease

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799941.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(rC)-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799941.1 Reference Poecilia_formosa-5.1.2

    Range
    1610633..1623535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007548922.2 → XP_007548984.1  poly(rC)-binding protein 2 isoform X2

    Conserved Domains (2) summary
    cd00105
    Location:248 → 310
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  2. XM_007548950.2 → XP_007549012.1  poly(rC)-binding protein 2 isoform X5

    Conserved Domains (2) summary
    cd00105
    Location:236 → 298
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  3. XM_016670224.1 → XP_016525710.1  poly(rC)-binding protein 2 isoform X1

    Conserved Domains (2) summary
    cd00105
    Location:250 → 312
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  4. XM_007548913.2 → XP_007548975.1  poly(rC)-binding protein 2 isoform X1

    Conserved Domains (2) summary
    cd00105
    Location:250 → 312
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  5. XM_007548941.2 → XP_007549003.1  poly(rC)-binding protein 2 isoform X4

    Conserved Domains (2) summary
    cd00105
    Location:239 → 301
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  6. XM_007548932.2 → XP_007548994.1  poly(rC)-binding protein 2 isoform X3

    Conserved Domains (2) summary
    cd00105
    Location:241 → 303
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  7. XM_007548958.2 → XP_007549020.1  poly(rC)-binding protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A096M583
    Conserved Domains (1) summary
    cl00098
    Location:13 → 82
    KH-I; K homology (KH) RNA-binding domain, type I

  8. XM_007548966.2 → XP_007549028.1  poly(rC)-binding protein 2 isoform X7

    See identical proteins and their annotated locations for XP_007549028.1

    UniProtKB/TrEMBL
    A0A096M583
    Related
    ENSPFOP00000026574.1, ENSPFOT00000023429.1
    Conserved Domains (3) summary
    cd22515
    Location:13 → 82
    KH-I_PCBP1_2_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cd22521
    Location:245 → 320
    KH-I_PCBP1_2_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cl00098
    Location:93 → 171
    KH-I; K homology (KH) RNA-binding domain, type I

  9. XM_007548973.2 → XP_007549035.1  poly(rC)-binding protein 2 isoform X8

    See identical proteins and their annotated locations for XP_007549035.1

    UniProtKB/TrEMBL
    A0A087XQ79, A0A096M583
    Related
    ENSPFOP00000007932.2, ENSPFOT00000007944.2
    Conserved Domains (3) summary
    cd22515
    Location:13 → 82
    KH-I_PCBP1_2_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cd22521
    Location:236 → 311
    KH-I_PCBP1_2_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cl00098
    Location:93 → 171
    KH-I; K homology (KH) RNA-binding domain, type I
Nucleotide Protein
Heading Accession and Version

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