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LOC103135085 zinc finger protein 385D-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 103135085, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103135085
Gene description
zinc finger protein 385D-like
See related
Ensembl:ENSPFOG00000010672
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103135085 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799960.1 (2101317..2129043)

NW_006799960.1Genomic Context describing neighboring genes Neighboring gene ubiquilin 4 Neighboring gene ras-related protein Rab-25-like Neighboring gene shugoshin 1 Neighboring gene K(lysine) acetyltransferase 2B Neighboring gene RAB5A, member RAS oncogene family, a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799960.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 385D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799960.1 Reference Poecilia_formosa-5.1.2

    Range
    2101317..2129043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007547683.2 → XP_007547745.1  zinc finger protein 385D-like isoform X5

    Conserved Domains (2) summary
    sd00020
    Location:196 → 218
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:259 → 282
    zf-met; Zinc-finger of C2H2 type

  2. XM_007547680.2 → XP_007547742.1  zinc finger protein 385D-like isoform X1

    Conserved Domains (2) summary
    sd00020
    Location:196 → 218
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:259 → 282
    zf-met; Zinc-finger of C2H2 type

  3. XM_007547681.2 → XP_007547743.1  zinc finger protein 385D-like isoform X2

    UniProtKB/TrEMBL
    A0A087XYA1
    Related
    ENSPFOP00000010754.2, ENSPFOT00000010769.2
    Conserved Domains (2) summary
    sd00020
    Location:195 → 217
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:258 → 281
    zf-met; Zinc-finger of C2H2 type

  4. XM_016669287.1 → XP_016524773.1  zinc finger protein 385D-like isoform X4

    Conserved Domains (2) summary
    sd00020
    Location:159 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:222 → 245
    zf-met; Zinc-finger of C2H2 type

  5. XM_007547682.2 → XP_007547744.1  zinc finger protein 385D-like isoform X3

    Conserved Domains (2) summary
    sd00020
    Location:186 → 208
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:249 → 272
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
Heading Accession and Version

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