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hcfc1b host cell factor C1b [ Poecilia formosa (Amazon molly) ]

Gene ID: 103130748, updated on 11-Mar-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
See related
Ensembl:ENSPFOG00000002355
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800606.1 (178262..188235, complement)

NW_006800606.1Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 1 inhibitor, like Neighboring gene uncharacterized LOC107834567 Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene uncharacterized LOC107834571 Neighboring gene interleukin-1 receptor-associated kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800606.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800606.1 Reference Poecilia_formosa-5.1.2

    Range
    178262..188235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007542232.2 → XP_007542294.1  host cell factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A087X9M7
    Related
    ENSPFOP00000002480.2, ENSPFOT00000002484.2
    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1185 → 1248
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain

  2. XM_016666146.1 → XP_016521632.1  host cell factor 1-like isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases