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LOC103130010 sal-like protein 3 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103130010, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103130010
Gene description
sal-like protein 3
See related
Ensembl:ENSPFOG00000013292
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103130010 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800537.1 (39820..50655)

NW_006800537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107834369 Neighboring gene ATPase phospholipid transporting 9B Neighboring gene uncharacterized LOC107834371 Neighboring gene nuclear factor of activated T cells 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800537.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800537.1 Reference Poecilia_formosa-5.1.2

    Range
    39820..50655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007541281.2 → XP_007541343.1  sal-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A096LW30
    Related
    ENSPFOP00000023371.1, ENSPFOT00000030106.1
    Conserved Domains (4) summary
    COG5048
    Location:392 → 726
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:644 → 664
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:702 → 724
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:984 → 1009
    zf-H2C2_2; Zinc-finger double domain

  2. XM_016665601.1 → XP_016521087.1  sal-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A096LW30
    Related
    ENSPFOP00000013295.2, ENSPFOT00000013313.2
    Conserved Domains (4) summary
    COG5048
    Location:391 → 725
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:701 → 723
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:983 → 1008
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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