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LPHN3 latrophilin 3 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103087945, updated on 16-Nov-2023

Summary

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Gene symbol
LPHN3
Gene description
latrophilin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
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Genomic context

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See LPHN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006770402.1 (1432421..2020826)

NW_006770402.1Genomic Context describing neighboring genes Neighboring gene RAN, member RAS oncogene family pseudogene Neighboring gene tRNA methyltransferase 9B (putative) Neighboring gene LON peptidase N-terminal domain and ring finger 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006770402 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion via plasma-membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
latrophilin-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006770402.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1432421..2020826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007446078.1 → XP_007446140.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WGH6
    Conserved Domains (7) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    pfam00002
    Location:948 → 1193
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1214 → 1321
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  2. XM_007446073.1 → XP_007446135.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WGH1
    Conserved Domains (8) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    COG0531
    Location:958 → 1185
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:948 → 1193
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1214 → 1586
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  3. XM_007446080.1 → XP_007446142.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WEZ1
    Conserved Domains (7) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    pfam00002
    Location:948 → 1193
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1214 → 1277
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  4. XM_007446079.1 → XP_007446141.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WC63
    Conserved Domains (8) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    COG0531
    Location:958 → 1176
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:948 → 1184
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1205 → 1312
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  5. XM_007446074.1 → XP_007446136.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WC57
    Conserved Domains (8) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    COG0531
    Location:958 → 1176
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:948 → 1184
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1205 → 1577
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  6. XM_007446081.1 → XP_007446143.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340W9N3
    Conserved Domains (8) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    COG0531
    Location:958 → 1176
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:948 → 1184
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1205 → 1268
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  7. XM_007446082.1 → XP_007446144.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WG52
    Conserved Domains (7) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    pfam00002
    Location:880 → 1125
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1146 → 1253
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  8. XM_007446076.1 → XP_007446138.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340W9M9
    Conserved Domains (7) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    pfam00002
    Location:880 → 1125
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1146 → 1518
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  9. XM_007446084.1 → XP_007446146.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WC68
    Conserved Domains (7) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    pfam00002
    Location:880 → 1125
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1146 → 1209
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  10. XM_007446083.1 → XP_007446145.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WGI1
    Conserved Domains (8) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    COG0531
    Location:890 → 1108
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:880 → 1116
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1137 → 1244
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  11. XM_007446077.1 → XP_007446139.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WG47
    Conserved Domains (8) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    COG0531
    Location:890 → 1108
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:880 → 1116
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1137 → 1509
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  12. XM_007446085.1 → XP_007446147.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WEZ5
    Conserved Domains (8) summary
    smart00284
    Location:143 → 399
    OLF; Olfactomedin-like domains
    smart00303
    Location:820 → 872
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:501 → 565
    HormR; Domain present in hormone receptors
    COG0531
    Location:890 → 1108
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:880 → 1116
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:49 → 129
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1137 → 1200
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:574 → 792
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain

  13. XM_007446075.1 → XP_007446137.1  latrophilin-3-like

    UniProtKB/TrEMBL
    A0A340WEY7
    Conserved Domains (8) summary
    smart00284
    Location:211 → 467
    OLF; Olfactomedin-like domains
    smart00303
    Location:888 → 940
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00008
    Location:569 → 633
    HormR; Domain present in hormone receptors
    COG0531
    Location:958 → 1176
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    pfam00002
    Location:948 → 1184
    7tm_2; 7 transmembrane receptor (Secretin family)
    pfam02140
    Location:117 → 197
    Gal_Lectin; Galactose binding lectin domain
    pfam02354
    Location:1205 → 1534
    Latrophilin; Latrophilin Cytoplasmic C-terminal region
    pfam16489
    Location:642 → 860
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
Nucleotide Protein
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