U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sfrp1b secreted frizzled-related protein 1b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103046908, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sfrp1b
Gene description
secreted frizzled-related protein 1b
See related
EnsemblRapid:ENSAMXG00025045968
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sfrp1b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 20 NC_064427.1 (21733825..21743566, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 20 NC_035916.1 (18307853..18317562, complement)

Chromosome 20 - NC_064427.1Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase-disintegrin-like atrolysin-A Neighboring gene protein phosphatase 3, catalytic subunit, gamma isozyme, b Neighboring gene golgin A7 Neighboring gene R3H domain and coiled-coil containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
secreted frizzled-related protein 1b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064427.1 Reference AstMex3_surface

    Range
    21733825..21743566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007254944.4 → XP_007255006.3  secreted frizzled-related protein 1b isoform X2

  2. XM_007254943.4 → XP_007255005.3  secreted frizzled-related protein 1b isoform X1

    Related
    ENSAMXP00025076651.1, ENSAMXT00025100984.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases