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chst6 carbohydrate sulfotransferase 6 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103042977, updated on 11-Mar-2024

Summary

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Gene symbol
chst6
Gene description
carbohydrate sulfotransferase 6
See related
EnsemblRapid:ENSAMXG00025004173
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See chst6 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 10 NC_064417.1 (11032998..11041525)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172731.1 (7680..17157)

Chromosome 10 - NC_064417.1Genomic Context describing neighboring genes Neighboring gene GABA(A) receptor-associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene spire-type actin nucleation factor 2 Neighboring gene syntrophin, beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064417.1 Reference AstMex3_surface

    Range
    11032998..11041525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007242452.4 → XP_007242514.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_007242514.1

    UniProtKB/TrEMBL
    A0A3B1JTA2, A0A8B9JCC8, A0A8T2LTF0
    Related
    ENSAMXP00025005913.1, ENSAMXT00025007936.1
    Conserved Domains (1) summary
    pfam13469
    Location:46 → 299
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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