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fut9a fucosyltransferase 9a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103042515, updated on 11-Mar-2024

Summary

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Gene symbol
fut9a
Gene description
fucosyltransferase 9a
See related
EnsemblRapid:ENSAMXG00025024761
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
fut9
Orthologs
human zebrafish all
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Genomic context

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See fut9a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 14 NC_064421.1 (3824022..3845908, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 9 NC_035905.1 (40322435..40332107)

Chromosome 14 - NC_064421.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor-beta receptor-associated protein 1 Neighboring gene four and a half LIM domains 5 Neighboring gene golgin subfamily A member 6-like protein 22 Neighboring gene mannosidase, endo-alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9
Names
fucosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064421.1 Reference AstMex3_surface

    Range
    3824022..3845908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007233649.3 → XP_007233711.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

    UniProtKB/TrEMBL
    A0A8B9K5F6, A0A8T2LJ81, W5LSQ5
    Related
    ENSAMXP00025039405.1, ENSAMXT00025050902.1
    Conserved Domains (2) summary
    pfam00852
    Location:185 → 353
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:61 → 169
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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