U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

plecb plectin b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103038913, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSAMXG00025039937
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
plec
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See plecb in Genome Data Viewer
Location:
chromosome: 6
Exon count:
38
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 6 NC_064413.1 (26690943..26899012)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 10 NC_035906.1 (24574701..24779796, complement)

Chromosome 6 - NC_064413.1Genomic Context describing neighboring genes Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene transmembrane channel-like 4 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene uncharacterized LOC125802415 Neighboring gene solute carrier family 52 member 3-2b Neighboring gene ubiquitin protein ligase E3D

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064413.1 Reference AstMex3_surface

    Range
    26690943..26899012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022673780.2 → XP_022529501.2  plectin isoform X6

    UniProtKB/TrEMBL
    A0A8B9L2B7
    Related
    ENSAMXP00025069771.1, ENSAMXT00025090022.1

  2. XM_015607864.3 → XP_015463350.3  plectin isoform X1

    UniProtKB/TrEMBL
    A0A8B9L510

  3. XM_007257276.4 → XP_007257338.3  plectin isoform X2

    UniProtKB/TrEMBL
    A0A8B9L510
    Related
    ENSAMXP00025069743.1, ENSAMXT00025089926.1

  4. XM_015607865.3 → XP_015463351.3  plectin isoform X3

    UniProtKB/TrEMBL
    A0A8B9L595

  5. XM_007257277.4 → XP_007257339.3  plectin isoform X4

    UniProtKB/TrEMBL
    A0A8B9L595
    Related
    ENSAMXP00025069750.1, ENSAMXT00025089954.1

  6. XM_022673777.2 → XP_022529498.2  plectin isoform X5

    UniProtKB/TrEMBL
    A0A8B9L510

  7. XM_007257280.4 → XP_007257342.3  plectin isoform X7

    UniProtKB/TrEMBL
    A0A8B9L3B3
    Related
    ENSAMXP00025069533.1, ENSAMXT00025089129.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.