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colgalt1a collagen beta(1-O)galactosyltransferase 1a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103033940, updated on 11-Mar-2024

Summary

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Gene symbol
colgalt1a
Gene description
collagen beta(1-O)galactosyltransferase 1a
See related
EnsemblRapid:ENSAMXG00025037314
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
colgalt1
Orthologs
zebrafish all
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Genomic context

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See colgalt1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 3 NC_064410.1 (5095055..5112843, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172924.1 (5018076..5038466)

Chromosome 3 - NC_064410.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1, alpha-like Neighboring gene GEM interacting protein Neighboring gene zinc finger protein 33A Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1
Names
collagen beta(1-O)galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064410.1 Reference AstMex3_surface

    Range
    5095055..5112843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007229044.4 → XP_007229106.2  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A3B1KEZ8, A0A8B9GU35
    Related
    ENSAMXP00025064814.1, ENSAMXT00025082305.1
    Conserved Domains (2) summary
    cd06532
    Location:328 → 511
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:47 → 161
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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