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si:ch211-269c21.2 carbohydrate sulfotransferase 8 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103031733, updated on 3-Dec-2024

Summary

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Gene symbol
si:ch211-269c21.2
Gene description
carbohydrate sulfotransferase 8
See related
EnsemblRapid:ENSAMXG00025007830
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See si:ch211-269c21.2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 10 NC_064417.1 (35996544..36070455)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 24 NC_035920.1 (40795537..40870630, complement)

Chromosome 10 - NC_064417.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125804734 Neighboring gene complexin 3a Neighboring gene N6-Methyl-AMP deaminase Neighboring gene transcription initiation factor TFIID subunit 4 Neighboring gene potassium channel tetramerization domain containing 15a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064417.1 Reference AstMex3_surface

    Range
    35996544..36070455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022684144.2 → XP_022539865.2  carbohydrate sulfotransferase 8

    UniProtKB/TrEMBL
    A0A3B1KGH7, A0A8T2LRC2
    Related
    ENSAMXP00025010176.1, ENSAMXT00025014500.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases