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chst3b carbohydrate (chondroitin 6) sulfotransferase 3b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103025878, updated on 11-Mar-2024

Summary

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Gene symbol
chst3b
Gene description
carbohydrate (chondroitin 6) sulfotransferase 3b
See related
EnsemblRapid:ENSAMXG00025004101
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See chst3b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 15 NC_064422.1 (17081990..17385764, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019171898.1 (124088..140133)

Chromosome 15 - NC_064422.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:zfos-911d5.4 Neighboring gene G-protein coupled receptor 26 Neighboring gene elongation of very long chain fatty acids protein Neighboring gene carboxypeptidase X (M14 family), member 2 Neighboring gene S-adenosylmethionine synthase-like Neighboring gene transmembrane protein 150A Neighboring gene fatty acid desaturase 6 Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene tripartite motif containing 16 Neighboring gene uncharacterized LOC125781308 Neighboring gene SEC31 homolog B, COPII coat complex component Neighboring gene NADH:ubiquinone oxidoreductase subunit B8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064422.1 Reference AstMex3_surface

    Range
    17081990..17385764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007241665.4 → XP_007241727.1  carbohydrate sulfotransferase 3b

    UniProtKB/TrEMBL
    A0A3B1JK88, A0A8B9HP04
    Related
    ENSAMXP00025005708.1, ENSAMXT00025007731.1
    Conserved Domains (1) summary
    cl21551
    Location:232 → 416
    Sulfotransfer_3; Sulfotransferase family

RNA

  1. XR_007424485.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases