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kirrel3b kirre like nephrin family adhesion molecule 3b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103024239, updated on 10-Oct-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
See related
EnsemblRapid:ENSAMXG00025011188
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 9 NC_064416.1 (33811115..34196257)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172912.1 (313937..705217, complement)

Chromosome 9 - NC_064416.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111196502 Neighboring gene uncharacterized LOC125804610 Neighboring gene uncharacterized LOC125804625 Neighboring gene uncharacterized LOC111191787 Neighboring gene BARX homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064416.1 Reference AstMex3_surface

    Range
    33811115..34196257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022667734.2 → XP_022523455.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8T2LRB1
    Related
    ENSAMXP00025014470.1, ENSAMXT00025021032.1
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 301
    Ig_2; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  2. XM_022667736.2 → XP_022523457.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8B9LD17
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 301
    Ig_2; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  3. XM_049483738.1 → XP_049339695.1  kin of IRRE-like protein 3 isoform X5

    Related
    ENSAMXP00025014488.1, ENSAMXT00025021066.1

  4. XM_022667735.2 → XP_022523456.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8T2LRB1
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 301
    Ig_2; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  5. XM_007250992.4 → XP_007251054.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    W5KL07
    Related
    ENSAMXP00025014454.1, ENSAMXT00025021000.1
    Conserved Domains (7) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:319 → 370
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:24 → 113
    IG_like; Immunoglobulin like
    pfam07679
    Location:305 → 386
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:224 → 301
    Ig_2; Immunoglobulin domain
    cl11960
    Location:22 → 113
    Ig; Immunoglobulin domain
Nucleotide Protein
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