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kptn kaptin (actin binding protein) [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103021475, updated on 11-Mar-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
EnsemblRapid:ENSAMXG00025018071
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 1 NC_064408.1 (33373438..33384118)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 3 NC_035899.1 (13201906..13211689)

Chromosome 1 - NC_064408.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 29-like Neighboring gene tripartite motif-containing protein 16-like Neighboring gene heterogeneous nuclear ribonucleoprotein L Neighboring gene serine and arginine rich splicing factor 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064408.1 Reference AstMex3_surface

    Range
    33373438..33384118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007260982.4 → XP_007261044.2  KICSTOR complex protein kaptin isoform X1

    UniProtKB/TrEMBL
    A0A8B9JS11, W5K1W5
    Related
    ENSAMXP00025021812.1, ENSAMXT00025032258.1
    Conserved Domains (1) summary
    pfam13517
    Location:317 → 381
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  2. XM_007260983.4 → XP_007261045.2  KICSTOR complex protein kaptin isoform X2

    UniProtKB/TrEMBL
    A0A8B9JS11
    Conserved Domains (1) summary
    pfam13517
    Location:316 → 380
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Nucleotide Protein
Heading Accession and Version

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