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SGMS1 sphingomyelin synthase 1 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103014494, updated on 11-Mar-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 16 NC_080079.1 (39630968..39933716)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006727353.1 (5417614..5692243, complement)

Chromosome 16 - NC_080079.1Genomic Context describing neighboring genes Neighboring gene rab GTPase-activating protein 1-like Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene APOBEC1 complementation factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080079.1 Reference mBalAcu1.1

    Range
    39630968..39933716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057530919.1 → XP_057386902.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  2. XM_057530928.1 → XP_057386911.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  3. XM_057530922.1 → XP_057386905.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  4. XM_057530929.1 → XP_057386912.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  5. XM_057530924.1 → XP_057386907.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  6. XM_057530923.1 → XP_057386906.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  7. XM_057530918.1 → XP_057386901.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  8. XM_057530927.1 → XP_057386910.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  9. XM_057530925.1 → XP_057386908.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  10. XM_057530926.1 → XP_057386909.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  11. XM_057530920.1 → XP_057386903.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  12. XM_057530930.1 → XP_057386913.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A384A6B9

  13. XM_007182841.1 → XP_007182903.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_007182903.1

    UniProtKB/TrEMBL
    A0A384A6B9
    Conserved Domains (3) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    smart00454
    Location:4 → 68
    SAM; Sterile alpha motif
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  14. XM_007182843.2 → XP_007182905.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_007182905.1

    UniProtKB/TrEMBL
    A0A384A6B9
    Conserved Domains (3) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    smart00454
    Location:4 → 68
    SAM; Sterile alpha motif
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  15. XM_007182844.1 → XP_007182906.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_007182906.1

    UniProtKB/TrEMBL
    A0A384A6B9
    Conserved Domains (3) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    smart00454
    Location:4 → 68
    SAM; Sterile alpha motif
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

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