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POMK protein O-mannose kinase [ Physeter catodon (sperm whale) ]

Gene ID: 102996084, updated on 10-Mar-2024

Summary

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Gene symbol
POMK
Gene description
protein O-mannose kinase
See related
Ensembl:ENSPCTG00005020417
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See POMK in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 20 NC_041233.1 (86562920..86581918, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 20 NC_041233.1 (86565372..86581908, complement)

Chromosome 20 - NC_041233.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 10 Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene farnesyltransferase, CAAX box, subunit alpha Neighboring gene hook microtubule tethering protein 3 Neighboring gene ring finger protein 170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041233.1 Reference ASM283717v5 Primary Assembly

    Range
    86562920..86581918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028481502.2 → XP_028337303.1  protein O-mannose kinase isoform X1

    UniProtKB/TrEMBL
    A0A455AMZ8
    Conserved Domains (1) summary
    cd00180
    Location:133 → 368
    PKc; Catalytic domain of Protein Kinases

  2. XM_055081049.1 → XP_054937024.1  protein O-mannose kinase isoform X2

    UniProtKB/TrEMBL
    A0A9W2WCF4

  3. XM_055081046.1 → XP_054937021.1  protein O-mannose kinase isoform X2

    UniProtKB/TrEMBL
    A0A9W2WCF4
    Related
    ENSPCTP00005028473.1, ENSPCTT00005031331.1

  4. XM_024131467.2 → XP_023987235.1  protein O-mannose kinase isoform X3

    UniProtKB/TrEMBL
    A0A2Y9TEG1
    Conserved Domains (1) summary
    cd00180
    Location:88 → 328
    PKc; Catalytic domain of Protein Kinases

  5. XM_055081047.1 → XP_054937022.1  protein O-mannose kinase isoform X3

    UniProtKB/TrEMBL
    A0A2Y9TEG1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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