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LOC102995144 myosin light chain 1/3, skeletal muscle isoform [ Physeter catodon (sperm whale) ]

Gene ID: 102995144, updated on 11-Apr-2024

Summary

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Gene symbol
LOC102995144
Gene description
myosin light chain 1/3, skeletal muscle isoform
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Also known as
MYL1
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Genomic context

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See LOC102995144 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 2 NC_041215.1 (112977338..113015874, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 2 NC_041215.1 (112977338..113015874, complement)

Chromosome 2 - NC_041215.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 1/3, skeletal muscle isoform Neighboring gene myosin light chain 1/3, skeletal muscle isoform-like Neighboring gene LanC like glutathione S-transferase 1 Neighboring gene carbamoyl-phosphate synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in contractile muscle fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin light chain 1/3, skeletal muscle isoform
Names
myosin light chain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041215.1 Reference ASM283717v5 Primary Assembly

    Range
    112977338..113015874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028481542.1 → XP_028337343.1  myosin light chain 1/3, skeletal muscle isoform isoform X1

    UniProtKB/TrEMBL
    A0A455AN39
    Conserved Domains (1) summary
    PTZ00184
    Location:47 → 195
    PTZ00184; calmodulin; Provisional

  2. XM_007123814.3 → XP_007123876.2  myosin light chain 1/3, skeletal muscle isoform isoform X3

    UniProtKB/TrEMBL
    A0A2Y9FII6
    Conserved Domains (1) summary
    PTZ00184
    Location:79 → 227
    PTZ00184; calmodulin; Provisional

  3. XM_007123813.3 → XP_007123875.1  myosin light chain 1/3, skeletal muscle isoform isoform X2

    UniProtKB/TrEMBL
    A0A2Y9FID3
    Conserved Domains (4) summary
    PTZ00184
    Location:4 → 149
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:87 → 148
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13405
    Location:10 → 39
    EF-hand_6; EF-hand domain
    cl08302
    Location:10 → 74
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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