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SC5D sterol-C5-desaturase [ Physeter catodon (sperm whale) ]

Gene ID: 102994174, updated on 10-Mar-2024

Summary

Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
Ensembl:ENSPCTG00005020828
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
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Genomic context

See SC5D in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 16 NC_041229.1 (11593368..11606077, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 16 NC_041229.1 (11593373..11606085, complement)

Chromosome 16 - NC_041229.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein Sm D3-like Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC102993987 Neighboring gene tectorin alpha Neighboring gene tubulin folding cofactor E like

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041229.1 Reference ASM283717v5 Primary Assembly

    Range
    11593368..11606077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007116374.4XP_007116436.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A2Y9F7M4
    Related
    ENSPCTP00005029106.1, ENSPCTT00005032012.1
    Conserved Domains (2) summary
    COG3000
    Location:40257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123253
    FA_hydroxylase; Fatty acid hydroxylase superfamily