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CD320 CD320 molecule [ Physeter catodon (sperm whale) ]

Gene ID: 102992033, updated on 10-Mar-2024

Summary

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Gene symbol
CD320
Gene description
CD320 molecule
See related
Ensembl:ENSPCTG00005013509
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See CD320 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) Unplaced Scaffold NW_021145408.1 (17942..22581)
102 previous assembly ASM283717v2 (GCF_002837175.2) Unplaced Scaffold NW_021145408.1 (17942..22581)

NW_021145408.1Genomic Context describing neighboring genes Neighboring gene KN motif and ankyrin repeat domain-containing protein 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A7 Neighboring gene ceramide synthase 4 Neighboring gene 60S ribosomal protein L14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis involved in cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD320 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NW_021145408.1 Reference ASM283717v5 Primary Assembly

    Range
    17942..22581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007109616.3 → XP_007109678.1  CD320 antigen

    UniProtKB/TrEMBL
    A0A2Y9EVS7
    Related
    ENSPCTP00005018956.1, ENSPCTT00005020868.1
    Conserved Domains (1) summary
    cd00112
    Location:128 → 163
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
Heading Accession and Version

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