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SNX30 sorting nexin family member 30 [ Physeter catodon (sperm whale) ]

Gene ID: 102990663, updated on 10-Mar-2024

Summary

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Gene symbol
SNX30
Gene description
sorting nexin family member 30
See related
Ensembl:ENSPCTG00005011673
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See SNX30 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 9 NC_041222.1 (12310688..12438329, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 9 NC_041222.1 (12310688..12438329, complement)

Chromosome 9 - NC_041222.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114486844 Neighboring gene lipocalin 9 Neighboring gene solute carrier family 46 member 2 Neighboring gene uncharacterized LOC114486923 Neighboring gene uncharacterized LOC129392386

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041222.1 Reference ASM283717v5 Primary Assembly

    Range
    12310688..12438329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028493636.2 → XP_028349437.1  sorting nexin-30 isoform X1

    UniProtKB/TrEMBL
    A0A455BL22
    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

  2. XM_024126278.2 → XP_023982046.1  sorting nexin-30 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9STQ4
    Related
    ENSPCTP00005016377.1, ENSPCTT00005018063.1
    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

RNA

  1. XR_003681138.2 RNA Sequence

  2. XR_003681139.2 RNA Sequence

  3. XR_003681140.2 RNA Sequence

  4. XR_003681141.2 RNA Sequence

  5. XR_003681142.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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