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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Physeter catodon (sperm whale) ]

Gene ID: 102986979, updated on 10-Mar-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
See related
Ensembl:ENSPCTG00005014951
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 1 NC_041214.2 (114283130..114365354, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 1 NC_041214.1 (114283130..114365348, complement)

Chromosome 1 - NC_041214.2Genomic Context describing neighboring genes Neighboring gene mitochondrial fission regulator 1-like Neighboring gene collagen type VIII alpha 1 chain Neighboring gene NADH-ubiquinone oxidoreductase chain 5-like Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene 60S ribosomal protein L12-like Neighboring gene 60S ribosomal protein L19-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041214.2 Reference ASM283717v5 Primary Assembly

    Range
    114283130..114365354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028494117.2 → XP_028349918.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_028494127.1 → XP_028349928.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_055085958.1 → XP_054941933.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9W2WS21

  4. XM_055085986.1 → XP_054941961.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A455BQ24

  5. XM_028494124.1 → XP_028349925.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_028494132.1 → XP_028349933.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A455BQ24
    Related
    ENSPCTP00005021018.1, ENSPCTT00005023147.1
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 294
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_028494110.1 → XP_028349911.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  8. XM_024120011.3 → XP_023975779.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Related
    ENSPCTP00005020977.1, ENSPCTT00005023104.1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  9. XM_024120018.3 → XP_023975786.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  10. XM_024120015.3 → XP_023975783.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SEI1
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  11. XM_028494140.2 → XP_028349941.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A455C1W9
    Conserved Domains (1) summary
    pfam00777
    Location:1 → 185
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  12. XM_055085962.1 → XP_054941937.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9W2WS21

  13. XM_055085987.1 → XP_054941962.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A9W2WS74
Nucleotide Protein
Heading Accession and Version

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