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DERA deoxyribose-phosphate aldolase [ Physeter catodon (sperm whale) ]

Gene ID: 102985313, updated on 10-Mar-2024

Summary

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Gene symbol
DERA
Gene description
deoxyribose-phosphate aldolase
See related
Ensembl:ENSPCTG00005012275
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See DERA in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 6 NC_041219.1 (64310729..64430895)
102 previous assembly ASM283717v2 (GCF_002837175.2) 6 NC_041219.1 (64310730..64430895)

Chromosome 6 - NC_041219.1Genomic Context describing neighboring genes Neighboring gene serine-threonine kinase receptor-associated protein Neighboring gene small nucleolar RNA SNORA23 Neighboring gene glycine cleavage system H protein, mitochondrial-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114486473 Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene solute carrier family 15 member 5 Neighboring gene uncharacterized LOC102990584

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041219.1 Reference ASM283717v5 Primary Assembly

    Range
    64310729..64430895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024129191.3 → XP_023984959.1  deoxyribose-phosphate aldolase isoform X1

    UniProtKB/TrEMBL
    A0A2Y9TAC3
    Related
    ENSPCTP00005017272.1, ENSPCTT00005019056.1
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  2. XM_024129192.3 → XP_023984960.1  deoxyribose-phosphate aldolase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9T829
    Related
    ENSPCTP00005017308.1, ENSPCTT00005019096.1
    Conserved Domains (1) summary
    cl28880
    Location:50 → 216
    Aldolase_Class_I; Class I aldolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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