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KIRREL3 kirre like nephrin family adhesion molecule 3 [ Physeter catodon (sperm whale) ]

Gene ID: 102981278, updated on 10-Mar-2024

Summary

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Gene symbol
KIRREL3
Gene description
kirre like nephrin family adhesion molecule 3
See related
Ensembl:ENSPCTG00005011347
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See KIRREL3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 16 NC_041229.1 (7497990..7632122)
102 previous assembly ASM283717v2 (GCF_002837175.2) 16 NC_041229.1 (7497990..7632122)

Chromosome 16 - NC_041229.1Genomic Context describing neighboring genes Neighboring gene nuclear cap-binding protein subunit 3-like Neighboring gene putative uncharacterized protein KIRREL3-AS3 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041229.1 Reference ASM283717v5 Primary Assembly

    Range
    7497990..7632122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007124682.2 → XP_007124744.2  kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A2Y9FJ64
    Related
    ENSPCTP00005016570.1, ENSPCTT00005018271.1
    Conserved Domains (4) summary
    cd05759
    Location:216 → 297
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:469 → 566
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:305 → 382
    Ig_2; Immunoglobulin domain
    cl28434
    Location:386 → 467
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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