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MED10 mediator complex subunit 10 [ Physeter catodon (sperm whale) ]

Gene ID: 102979964, updated on 10-Mar-2024

Summary

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Gene symbol
MED10
Gene description
mediator complex subunit 10
See related
Ensembl:ENSPCTG00005002031
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See MED10 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 8 NC_041221.1 (20664663..20804662, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 8 NC_041221.1 (20656107..20804661, complement)

Chromosome 8 - NC_041221.1Genomic Context describing neighboring genes Neighboring gene interactor of little elongation complex ELL subunit 1 Neighboring gene 40S ribosomal protein S25-like Neighboring gene uncharacterized LOC114486692 Neighboring gene uncharacterized LOC114486813 Neighboring gene uncharacterized LOC114486694

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041221.1 Reference ASM283717v5 Primary Assembly

    Range
    20664663..20804662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055086505.1 → XP_054942480.1  mediator of RNA polymerase II transcription subunit 10 isoform X1

    UniProtKB/TrEMBL
    A0A9W2WTK4

  2. XM_028492795.2 → XP_028348596.1  mediator of RNA polymerase II transcription subunit 10 isoform X6

    UniProtKB/TrEMBL
    A0A455BXR0
    Conserved Domains (1) summary
    pfam09748
    Location:9 → 70
    Med10; Transcription factor subunit Med10 of Mediator complex

  3. XM_028492794.2 → XP_028348595.1  mediator of RNA polymerase II transcription subunit 10 isoform X5

    UniProtKB/TrEMBL
    A0A455BI02
    Conserved Domains (1) summary
    pfam09748
    Location:9 → 103
    Med10; Transcription factor subunit Med10 of Mediator complex

  4. XM_028492793.2 → XP_028348594.1  mediator of RNA polymerase II transcription subunit 10 isoform X3

    UniProtKB/TrEMBL
    A0A455BIE9
    Conserved Domains (1) summary
    pfam09748
    Location:9 → 70
    Med10; Transcription factor subunit Med10 of Mediator complex

  5. XM_007107833.4 → XP_007107895.1  mediator of RNA polymerase II transcription subunit 10 isoform X2

    See identical proteins and their annotated locations for XP_007107895.1

    UniProtKB/TrEMBL
    A0A2Y9ETC7
    Related
    ENSPCTP00005002818.1, ENSPCTT00005003093.1
    Conserved Domains (1) summary
    pfam09748
    Location:9 → 126
    Med10; Transcription factor subunit Med10 of Mediator complex

  6. XM_055086506.1 → XP_054942481.1  mediator of RNA polymerase II transcription subunit 10 isoform X4

    UniProtKB/TrEMBL
    A0A9W2WT91

RNA

  1. XR_008618024.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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