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RPIA ribose 5-phosphate isomerase A [ Physeter catodon (sperm whale) ]

Gene ID: 102978818, updated on 10-Mar-2024

Summary

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Gene symbol
RPIA
Gene description
ribose 5-phosphate isomerase A
See related
Ensembl:ENSPCTG00005006716
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See RPIA in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 12 NC_041225.1 (12024322..12140245)
102 previous assembly ASM283717v2 (GCF_002837175.2) 12 NC_041225.1 (12024322..12140245)

Chromosome 12 - NC_041225.1Genomic Context describing neighboring genes Neighboring gene sperm microtubule inner protein 9 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 3 Neighboring gene eukaryotic translation initiation factor 4B-like Neighboring gene immunoglobulin kappa light chain-like Neighboring gene immunoglobulin kappa variable 3-20-like Neighboring gene immunoglobulin kappa variable 2-30-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-ribose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribose-5-phosphate isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041225.1 Reference ASM283717v5 Primary Assembly

    Range
    12024322..12140245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028497089.1 → XP_028352890.1  ribose-5-phosphate isomerase isoform X6

    UniProtKB/TrEMBL
    A0A455BV77
    Conserved Domains (1) summary
    cd01398
    Location:77 → 275
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  2. XM_055088871.1 → XP_054944846.1  ribose-5-phosphate isomerase isoform X2

    UniProtKB/TrEMBL
    A0A9W2X058

  3. XM_055088872.1 → XP_054944847.1  ribose-5-phosphate isomerase isoform X3

    UniProtKB/TrEMBL
    A0A9W2X066

  4. XM_007102534.4 → XP_007102596.1  ribose-5-phosphate isomerase isoform X5

    UniProtKB/TrEMBL
    A0A2Y9EGY3
    Related
    ENSPCTP00005009492.1, ENSPCTT00005010454.1
    Conserved Domains (1) summary
    cd01398
    Location:77 → 275
    RPI_A; RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  5. XM_007102536.4 → XP_007102598.1  ribose-5-phosphate isomerase isoform X8

    UniProtKB/TrEMBL
    A0A2Y9EID7
    Conserved Domains (1) summary
    cd01398
    Location:77 → 242
    RPI_A; RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  6. XM_055088873.1 → XP_054944848.1  ribose-5-phosphate isomerase isoform X4

    UniProtKB/TrEMBL
    A0A9W2X0C9

  7. XM_007102535.4 → XP_007102597.1  ribose-5-phosphate isomerase isoform X7

    UniProtKB/TrEMBL
    A0A2Y9EIX1
    Conserved Domains (1) summary
    cd01398
    Location:77 → 242
    RPI_A; RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  8. XM_007102533.4 → XP_007102595.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A2Y9EHP4
    Related
    ENSPCTP00005009514.1, ENSPCTT00005010479.1
    Conserved Domains (1) summary
    cd01398
    Location:77 → 294
    RPI_A; RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...
Nucleotide Protein
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