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SDC2 syndecan 2 [ Physeter catodon (sperm whale) ]

Gene ID: 102978350, updated on 10-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSPCTG00005006539
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 15 NC_041228.1 (39519916..39636620, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 15 NC_041228.1 (39519916..39636620, complement)

Chromosome 15 - NC_041228.1Genomic Context describing neighboring genes Neighboring gene TSPY like 5 Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene carboxypeptidase Q Neighboring gene phosphatidylserine synthase 1 Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041228.1 Reference ASM283717v5 Primary Assembly

    Range
    39519916..39636620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007107147.3 → XP_007107209.1  syndecan-2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9ES42
    Related
    ENSPCTP00005009265.1, ENSPCTT00005010199.1
    Conserved Domains (1) summary
    pfam01034
    Location:139 → 200
    Syndecan; Syndecan domain

  2. XM_007107148.3 → XP_007107210.1  syndecan-2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9RZD0
    Conserved Domains (1) summary
    pfam01034
    Location:110 → 171
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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