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NXF1 nuclear RNA export factor 1 [ Physeter catodon (sperm whale) ]

Gene ID: 102977911, updated on 10-Mar-2024

Summary

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Gene symbol
NXF1
Gene description
nuclear RNA export factor 1
See related
Ensembl:ENSPCTG00005017079
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See NXF1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) Unplaced Scaffold NW_021145308.1 (190434..199222, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) Unplaced Scaffold NW_021145308.1 (190434..199179, complement)

NW_021145308.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NW_021145308.1 Reference ASM283717v5 Primary Assembly

    Range
    190434..199222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007109969.4 → XP_007110031.1  nuclear RNA export factor 1

    UniProtKB/TrEMBL
    A0A2Y9EVT8
    Related
    ENSPCTP00005024172.1, ENSPCTT00005026634.1
    Conserved Domains (7) summary
    smart00804
    Location:560 → 622
    TAP_C; C-terminal domain of vertebrate Tap protein
    cd00116
    Location:210 → 356
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00780
    Location:386 → 542
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:228 → 270
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:120 → 202
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:295 → 333
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:269 → 329
    LRR_8; Leucine rich repeat
Nucleotide Protein
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