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LOC102977145 torsin-1A-interacting protein 2 [ Physeter catodon (sperm whale) ]

Gene ID: 102977145, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102977145
Gene description
torsin-1A-interacting protein 2
See related
Ensembl:ENSPCTG00005018436
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Also known as
TOR1AIP2
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Genomic context

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See LOC102977145 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 4 NC_041217.1 (50182865..50222156, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 4 NC_041217.1 (50182865..50222193, complement)

Chromosome 4 - NC_041217.1Genomic Context describing neighboring genes Neighboring gene cyclic AMP-dependent transcription factor ATF-1-like Neighboring gene family with sequence similarity 163 member A Neighboring gene torsin-1A-interacting protein 2 Neighboring gene torsin 1A interacting protein 1 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene centrosomal protein 350 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2
Names
torsin A interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041217.1 Reference ASM283717v5 Primary Assembly

    Range
    50182865..50222156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007104664.3 → XP_007104726.1  torsin-1A-interacting protein 2

    See identical proteins and their annotated locations for XP_007104726.1

    UniProtKB/TrEMBL
    A0A2Y9EMT6
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 468
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_007104665.3 → XP_007104727.1  torsin-1A-interacting protein 2

    See identical proteins and their annotated locations for XP_007104727.1

    UniProtKB/TrEMBL
    A0A2Y9EMT6
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 468
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_055084184.1 → XP_054940159.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A2Y9EMT6
    Related
    ENSPCTP00005025731.1, ENSPCTT00005028331.1
Nucleotide Protein
Heading Accession and Version

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